| Team | Year | Manager | Wins | Losses | Win % |
|---|---|---|---|---|---|
| Cleveland Quirks Houston Quirks(2006) Toronto Quirks(2009) | 2003 | Lonnie Magargle | 544 | 273 | 0.666 |
| Pittsburgh Pirates | 2003 | Doug Smith | 525 | 292 | 0.643 |
| San Diego Zoo | 2003 | Daryl Cooper | 462 | 355 | 0.565 |
| Anaheim Halos Anaheim Monkies(2005) New York Monkies(2006) Colorado Monkies(2009) | 2003 | Rich Chenoweth Andrew Magargle(2005) | 459 | 358 | 0.562 |
| Seattle Slews Tampa Bay Phenom(2007) | 2003 | Glenn Morton League(2006) Mike Wittreich(2007) | 436 | 383 | 0.532 |
| Toronto Blue Jays Washington Green Badgers(2006) Cleveland Green Badgers(2009) | 2003 | Eric Labram League(2005) Chris Kidwell(2006) | 425 | 393 | 0.520 |
| San Francisco Giants | 2003 | Dennis Fitzgerald | 416 | 400 | 0.510 |
| Oakland A-Sox | 2003 | Steve Aikens | 402 | 415 | 0.492 |
| New York Yankees New York Yawners(2008) Minnesota Fire(2009) | 2003 | John Francis Jeffrey Cooper(2008) | 379 | 437 | 0.464 |
| Houston Colt 45s Minnesota Twinkies(2005) Boston Revolution(2007) Boston Red Sox(2009) | 2003 | Tony Soltero Don Acosta(2005) Brian Hess(2007) League(2008) John Hall(2009) | 347 | 469 | 0.425 |
| Philadelphia Phillies Kansas City Royals(2006) Philadelphia Phillies(2009) | 2003 | Carroll Reese | 341 | 475 | 0.418 |
| Baltimore Orioles | 2003 | Don Hanson | 334 | 482 | 0.409 |
| Florida Marlins | 2003 | Craig Bergeron | 332 | 484 | 0.407 |
| Atlanta Braves | 2003 | Bob Glaub | 315 | 501 | 0.386 |